The University of Arizona

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Publications

Year 2005

The International Rice Genome Sequencing Project Project.
The Map Based Sequence of the Rice Genome.
Nature 436:793-800.
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The Rice Chromosome 3 Sequencing Consortium (R. Buell, W.R. McCombie & R. Wing - Corresponding Authors).
Sequence, Annotation, and Analysis of Synteny Between Rice Chromosome 3 and Diverged Grass Species.
Genome Res 15:1-10.
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Ammiraju, J.S.S., Y Yu, M. Luo, D. Kudrna, H.R. Kim, J. Goicoechea, Y. Katayose, T. Matsumoto, J. Wu, T. Sasaki, R.A. Wing.
Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Japonica cv Nipponbare) genome sequence: sequencing of gap specific fosmid clones uncovers new euchromatic portions of the genome.
Theor Appl Genet 111:1596-1607
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The Rice Chromosomes 11 and 12 Sequencing Consortium.
The Sequence of Rice Chromosomes 11 and 12, rich in disease resistance genes and recent duplications.
BMC Biology 3:20-37.
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Yang, T.-J., Y. Yu, S.-B. Chang, H.d. Jong, C.-S. Oh, S.-N. Ahn, E. Fang, and R.A. Wing.
Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions.
Theor Appl Genet 111:467-78
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Yang, T.-J., S. Lee, S.-B. Chang, Y. Yu, H.d. Jong, and R.A. Wing.
In-depth sequence analysis of the tomato chromosome 12 centromere: identification of a large CAA block and characterization of a species-specific pericentromere retrotranposons.
Chromosoma 114:103-117.
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Wing, R.A., J.S.S. Ammiraju, M. Luo, H.R. Kim, Y. Yu, D. Kudrna, J.L. Goicoechea, W. Wang, W. Nelson, K. Rao, C. Soderlund, D. Brar, D.J. Mackill, B. Han, L. Stein, P. SanMiguel, and S. Jackson.
The Oryza Map Alignment Project: The Golden Path to Unlocking the Genetic Potential of Wild Rice Species.
Plant Molecular Biology 59:53-62.
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Bowers, J.E., M.A. Arias, R. Asher, J.A. Avise, R.T. Ball, G.A. Brewer, R.W. Buss, A.H. Chen, T.M. Edwards, J.C. Estill, H.E. Exum, V.H. Goff, K.L. Herrick, C.L. Steele, S. Karunakaran, G.K. Lafayette, C. Lemke, B.S. Marler, S.L. Masters, J.M. McMillan, L.K. Nelson, G.A. Newsome, C.C. Nwakanma, R.N. Odeh, C.A. Phelps, E.A. Rarick, C.J. Rogers, S.P. Ryan, K.A. Slaughter, C.A. Soderlund, H. Tang, R.A. Wing, and A.H. Paterson.
Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses.
Proc Natl Acad Sci U S A 102:13206-13211.
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Haberer, G., S. Young, A.K. Bharti, H. Gundlach, C. Raymond, G. Fuks, E. Butler, R.A. Wing, S. Rounsley, B. Birren, C. Nusbaum, K.F. Mayer, and J. Messing.
Structure and architecture of the maize genome.
Plant Physiol 139:1612-1624.

Pratt, L.H., C. Liang, M. Shah, F. Sun, H. Wang, S.P. Reid, A.R. Gingle, A.H. Paterson, R. Wing, R. Dean, R. Klein, H.T. Nguyen, H.M. Ma, X. Zhao, D.T. Morishige, J.E. Mullet, and M.M. Cordonnier-Pratt.
Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts.
Plant Physiol 139: 869-884.
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Nelson, W.M., A.K. Bharti, E. Butler, F. Wei, G. Fuks, H. Kim, R.A. Wing, J. Messing, and C. Soderlund.
Whole-Genome Validation of High-Information-Content Fingerprinting.
Plant Physiol 139: 27-38.
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Kumar, C.S., R.A. Wing, and V. Sundaresan.
Efficient insertional mutagenesis in rice using maize En/Spm elements.
The Plant Journal 139: 27-38.
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Wang, W., M. Tanurdzic, M. Luo, N. Sisneros, H.R. Kim, J.K. Weng, D. Kudrna, C. Mueller, K. Arumuganathan, J. Carlson, C. Chapple, C. de Pamphilis, D. Mandoli, J. Tomkins, R.A. Wing, and J.A. Banks.
Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics.
BMC Plant Biol 5:10-18.
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Horn, R., A.C. Lecouls, A. Callahan, A. Dandekar, L. Garay, P. McCord, W. Howad, H. Chan, I. Verde, D. Main, S. Jung, L. Georgi, S. Forrest, J. Mook, T. Zhebentyayeva, Y. Yu, H.R. Kim, C. Jesudurai, B. Sosinski, P. Arus, V. Baird, D. Parfitt, G. Reighard, R. Scorza, J. Tomkins, R. Wing, and A.G. Abbott.
Candidate gene database and transcript map for peach, a model species for fruit trees.
Theor Appl Genet 110:1419-1428.
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Chetchawan, J., M. Gowda, K. Haller, J. Hatfield, G. Lu, E. Stahlberg, B. Zhou, H. Li, H. Kim, Y. Yu, R.A. Dean, R.A. Wing, C. Soderlund, and G.L. Wang.
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.
Plant Physiol 138: 105-115.
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