Publications
Year 2009
Patrick S. Schnable*, Doreen Ware*, Robert S. Fulton+, Joshua C. Stein+, Fusheng Wei+,
Shiran Pasternak, Chengzhi Liang, Jianwei Zhang, Lucinda Fulton, Tina A. Graves,
Patrick Minx, Amy Denise Reily, Laura Courtney, Scott S. Kruchowski, Chad Tomlinson,
Cindy Strong, Kim Delehaunty, Catrina Fronick, Bill Courtney, Susan M. Rock, Eddie Belter,
Feiyu Du, Kyung Kim, Rachel M. Abbott, Marc Cotton, Andy Levy, Pamela Marchetto,
Kerri Ochoa, Stephanie M. Jackson, Barbara Gillam, Weizu Chen, Le Yan, Jamey Higginbotham,
Marco Cardenas, Jason Waligorski, Elizabeth Applebaum, Lindsey Phelps, Jason Falcone,
Krishna Kanchi, Thynn Thane, Adam Scimone, Nay Thane, Jessica Henke, Tom Wang,
Jessica Ruppert, Neha Shah, Kelsi Rotter, Jennifer Hodges, Elizabeth Ingenthron,
Matt Cordes, Sara Kohlberg, Jennifer Sgro, Brandon Delgado, Kelly Mead, Asif Chinwalla,
Shawn Leonard, Kevin Crouse, Kristi Collura, Dave Kudrna, Jennifer Currie, Ruifeng He,
Angelina Angelova, Shanmugam Rajasekar, Teri Mueller, Rene Lomeli, Gabriel Scara, Ara Ko,
Krista Delaney, Marina Wissotski, Georgina Lopez, David Campos, Michele Braidotti,
Elizabeth Ashley, Wolfgang Golser, HyeRan Kim, Seunghee Lee, Jinke Lin, Zeljko Dujmic,
Woojin Kim, Jayson Talag, Andrea Zuccolo, Chuanzhu Fan, Aswathy Sebastian, Melissa Kramer,
Lori Spiegel, Lidia Nascimento, Theresa Zutavern, Beth Miller, Claude Ambroise,
Stephanie Muller, Will Spooner, Apurva Narechania, Liya Ren, Sharon Wei, Sunita Kumari,
Ben Faga, Michael J. Levy, Linda McMahan, Peter Van Buren, Matthew W. Vaughn, Kai Ying,
Cheng-Ting Yeh, Scott J. Emrich, Yi Jia, Ananth Kalyanaraman, An-Ping Hsia,
W. Brad Barbazuk, Regina S. Baucom, Thomas P. Brutnell, Nicholas C. Carpita,
Cristian Chaparro, Jer-Ming Chia, Jean-Marc Deragon, James C. Estill, Yan Fu,
Jeffrey A. Jeddeloh, Yujun Han, Hyeran Lee, Pinghua Li, Damon R. Lisch,
Sanzhen Liu, Zhijie Liu, Dawn Holligan Nagel, Maureen C. McCann, Phillip SanMiguel,
Alan M. Myers, Dan Nettleton, John Nguyen, Bryan W. Penning, Lalit Ponnala,
Kevin L. Schneider, David C. Schwartz, Anupma Sharma, Carol Soderlund,
Nathan M. Springer, Qi Sun, Hao Wang, Michael Waterman, Richard Westerman,
Thomas K. Wolfgruber, Lixing Yang, Yeisoo Yu, Lifang Zhang, Shiguo Zhou, Qihui Zhu,
Jeffrey L. Bennetzen, R. Kelly Dawe, Jiming Jiang, Ning Jiang, Gernot G. Presting,
Susan R. Wessler, Srinivas Aluru, Robert A. Martienssen, Sandra W. Clifton,
W. Richard McCombie, Rod A. Wing, Richard K. Wilson
The B73 Maize Genome: Complexity, Diversity, and Dynamics
Science 326, 1112 (2009), DOI: 10.1126/science.1178534
*These authors contributed equally to this work;
+These authors contributed equally to data production and analysis
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Fusheng Wei#, Jianwei Zhang#, Shiguo Zhou, Ruifeng He, Mary Schaeffer, Kristi Collura, David
Kudrna, Ben P. Faga, Marina Wissotski, Wolfgang Golser, Susan M. Rock, Tina A. Graves, Robert S.
Fulton, Ed Coe, Patrick S. Schnable, David C. Schwartz, Doreen Ware, Sandra W. Clifton, Richard K.
Wilson, Rod A. Wing
The Physical and Genetic Framework of the Maize B73 Genome
PLoS Genetics, November 2009, Volume 5 Issue 11, e1000715
#These authors contributed equally to this work
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Carol Soderlund, Anne Descour, Dave Kudrna, Matthew Bomhoff, Lomax Boyd, Jennifer Currie,
Angelina Angelova, Kristi Collura, Marina Wissotski, Elizabeth Ashley, Darren Morrow, John
Fernandes, Virginia Walbot, Yeisoo Yu
Sequencing, Mapping, and Analysis of 27,455 Maize Full-Length cDNAs
PLoS Genetics, November 2009, Volume 5 Issue 11, e1000740
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Fusheng Wei, Joshua C. Stein, Chengzhi Liang, Jianwei Zhang, Robert S. Fulton, Regina S. Baucom,
Emanuele De Paoli, Shiguo Zhou, Lixing Yang, Yujun Han, Shiran Pasternak, Apurva Narechania,
Lifang Zhang, Cheng-Ting Yeh, Kai Ying, Dawn H. Nagel, Kristi Collura, David Kudrna, Jennifer
Currie, Jinke Lin, HyeRan Kim, Angelina Angelova, Gabriel Scara, Marina Wissotski, Wolfgang
Golser, Laura Courtney, Scott Kruchowski, Tina A. Graves, Susan M. Rock, Stephanie Adams,
Lucinda A. Fulton, Catrina Fronick, William Courtney, Melissa Kramer, Lori Spiegel, Lydia
Nascimento, Ananth Kalyanaraman, Cristian Chaparro, Jean-Marc Deragon, Phillip San Miguel,
Ning Jiang, Susan R. Wessler, Pamela J. Green, Yeisoo Yu, David C. Schwartz, Blake C. Meyers,
Jeffrey L. Bennetzen, Robert A. Martienssen, W. Richard McCombie, Srinivas Aluru , Sandra W.
Clifton, Patrick S. Schnable, Doreen Ware, Richard K. Wilson, Rod A. Wing
Detailed Analysis of a Contiguous 22-Mb Region of the Maize Genome
PLoS Genetics, November 2009, Volume 5 Issue 11, e1000728
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Shiguo Zhou, Fusheng Wei, John Nguyen, Mike Bechner, Konstantinos Potamousis, Steve
Goldstein, Louise Pape, Michael R. Mehan, Chris Churas, Shiran Pasternak, Dan K. Forrest,
Roger Wise, Doreen Ware, Rod A. Wing, Michael S. Waterman, Miron Livny, David C. Schwartz
A Single Molecule Scaffold for the Maize Genome
PLoS Genetics, November 2009, Volume 5 Issue 11, e1000711
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Dongying Gao, Navdeep Gill, Hye-Ran Kim, Jason G Walling, Wenli Zhang, Chuanzhu Fan, Yeisoo Yu, Jianxin Ma,
Phillip SanMiguel, Ning Jiang, Zhukuan Cheng, Rod A. Wing, Jiming Jiang and Scott A. Jackson
A lineage-specific centromere retrotransposon in Oryza brachyantha
The Plant Journal, (2009),Received 6 June 2009; revised 28 July 2009; accepted 7 August 2009. doi: 10.1111/j.1365-313X.2009.04005.x
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Lin Jin-ke, Dave Kudrna, Rod A Wing
Preparation of high molecular weight (HMW) genomic DNA from tea
plant (Camellia sinensis) for BAC library construction
Journal of Agricultural Science and Technology, ISSN1939-1250, USA. Jan. 2009, Volume 3, No.1
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Gyoungju Nah, Christopher L. Pagliarulo, Peter G. Mohr, Meizhong Luo, Nick Sisneros, Yeisoo Yu,
Kristi Collura, Jennifer Currie, Jose Luis Goicoechea, Rod A. Wing, Karen S. Schumaker
Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in
Thellungiella halophila and Arabidopsis thaliana
Genomics 94 (2009) 196–203. Available online 28 May 2009, doi:10.1016/j.ygeno.2009.05.007
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Patrick H. Degnan, Yeisoo Yu, Nicholas Sisneros, Rod A. Wing and Nancy A. Moran
Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors
PNAS, Published online before print May 18, 2009, doi: 10.1073/pnas.0900194106
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Steve Rounsley, Pradeep Reddy Marri, Yeisoo Yu, Ruifeng He, Nick Sisneros,
Jose Luis Goicoechea, So Jeong Lee, Angelina Angelova, Dave Kudrna,
Meizhong Luo, Jason Affourtit, Brian Desany, James Knight, Faheem Niazi,
Michael Egholm, Rod A. Wing
De Novo Next Generation Sequencing of Plant Genomes
Rice (2009) 2:35–43 published online: 7 March 2009, doi:10.1007/s12284-009-9025-z
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Fei Lu*, Jetty S. S. Ammiraju*, Abhijit Sanyal*, Shengli Zhang*, Rentao Song*, Jinfeng Chen, Guisheng Li,
Yi Sui, Xiang Song, Zhukuan Cheng, Antonio Costa de Oliveira, Jeffrey L. Bennetzen#, Scott A. Jackson#, Rod A. Wing#, and Mingsheng Chen#
*Co-first authors, #Co-corresponding authors
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
Published online before print January 22, 2009, doi: 10.1073/pnas.0812798106
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Husen Zhang, John K. DiBaise, Andrea Zuccolo, Dave Kudrna, Michele Braidotti, Yeisoo Yu,
Prathap Parameswaran, Michael D. Crowell, Rod Wing, Bruce E. Rittmann, and Rosa Krajmalnik-Brown
Human gut microbiota in obesity and after gastric bypass
PNAS published online before print January 21, 2009, doi:10.1073/pnas.0812600106
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